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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149023353_149030715_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149023353 - 149030715
Intron Length:
7363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAGA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
TTGTTTGCAAAT
Flanking Amino Acid:
GLISRAKAIKKFEESQGRAN
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.7
40.1
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
82.7
0.74
0.9
80.5
37
Minor 5ss
31.4
-2.1
3.1
40.2
45.5
Minor BPS
45.6
-0.2
2.2
68.48
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025021
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018101
149022544 - 149049593
27050