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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149030898_149034559_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
149030898 - 149034559
Intron Length:
3662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTTTTATCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TGTTCCCTACTC
Flanking Amino Acid:
SFSRALENATRDQFITCPII
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
75.5
34.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
80.8
0.69
0.8
80.7
29.7
Minor 5ss
34.3
-1.8
3
44.8
42.9
Minor BPS
56.5
0.18
2
71.86
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025021
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018101
149022544 - 149049593
27050