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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149044367_149049344_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149044367 - 149049344
Intron Length:
4978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTGTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TGAATCTTAATT
Flanking Amino Acid:
DYIRRLKESTGSASNGEQSS
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
79.3
31.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83.6
0.76
0.8
77.6
36.1
Minor 5ss
33.2
-1.9
2.8
39
46.4
Minor BPS
69.7
0.7
1.2
78.21
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025021
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018101
149022544 - 149049593
27050