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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149078374_149081754_F

Intron Information:

Intron Rank:
144444
Intron Class:
major
Intron Phase:
Intron Coordinates:
149078374 - 149081754
Intron Length:
3381

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTGTG
5'SS Class:
major
3'SS Sequence:
CTGTCTCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTTTCCCCATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
69
41.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
74.2
0.54
0.8
65.8
36
Minor 5ss
35.4
-1.7
3.5
45.6
44.9
Minor BPS
46.8
-0.2
2.1
63.2
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027835
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020008
149077895 - 149082538
4644