About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149090296_149119149_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149090296 - 149119149
Intron Length:
28854

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
AGTTTCCAAGCT
Flanking Amino Acid:
WILATSSILQAIAQTSTTMT
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
84.7
0.78
0.8
80.6
31.5
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
45.4
-0.2
2.1
67.59
43

Associated Gene:

Gene:
CCN4
Ensembl Gene ID:
ENSAPLG00000002582
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002626
149089682 - 149125384
35703