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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14910820_14911608_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14910820 - 14911608
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCACAT
U12 Branch Point Sequence:
TTTGCCACCATT
Flanking Amino Acid:
NSNSSANTSQGFVSKTLDSV
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.2
Major BPS
68.9
0.47
1
75
30
Major PPT
86
0.81
0.7
85.4
29.4
Minor 5ss
25.4
-2.8
3.5
36.8
47.7
Minor BPS
45.9
-0.2
2.3
72.93
44.2

Associated Gene:

Gene:
EPC1
Ensembl Gene ID:
ENSAPLG00000008897
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043045
14847872 - 14913286
65415
ENSAPLT00000028590
14843996 - 14913286
69291
ENSAPLT00000009276
14847872 - 14913286
65415