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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14912249_14913213_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14912249 - 14913213
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTTTCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTAAT
U12 Branch Point Sequence:
GTCTCGTTAATT
Flanking Amino Acid:
PASSSVDAVPRENHETEKPA
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
87.9
29.3
Major BPS
72
0.55
1.2
73.3
39.1
Major PPT
74.7
0.56
1
70
40.3
Minor 5ss
44.7
-0.6
3.2
66.4
45.1
Minor BPS
64
0.52
2.1
80.32
42.1

Associated Gene:

Gene:
EPC1
Ensembl Gene ID:
ENSAPLG00000008897
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028590
14843996 - 14913286
69291
ENSAPLT00000009276
14847872 - 14913286
65415
ENSAPLT00000043045
14847872 - 14913286
65415