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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149137203_149138037_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149137203 - 149138037
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTACT
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
GTCTACACAACA
Flanking Amino Acid:
FKYFVQGMGYMPSASMTRLM
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
78.5
35.5
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
91.7
0.94
0.6
84.6
30.3
Minor 5ss
40.6
-1.1
2.8
58.6
39.3
Minor BPS
47.7
-0.1
2
62.88
42.6

Associated Gene:

Gene:
NDRG1
Ensembl Gene ID:
ENSAPLG00000015644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030653
149136937 - 149148269
11333
ENSAPLT00000020314
149136285 - 149161042
24758
ENSAPLT00000016349
149136937 - 149209284
72348