About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149139097_149140645_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149139097 - 149140645
Intron Length:
1549

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAACA
5'SS Class:
strong_major
3'SS Sequence:
ATCCCTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
AATACACTAACT
Flanking Amino Acid:
LDPTRTTLLKMADCGGLPQV
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.3
32.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.2
0.59
0.9
72.8
36.8
Minor 5ss
33.8
-1.8
2.8
42
44.2
Minor BPS
52.8
0.17
2
75.27
40.2

Associated Gene:

Gene:
NDRG1
Ensembl Gene ID:
ENSAPLG00000015644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016349
149136937 - 149209284
72348
ENSAPLT00000030653
149136937 - 149148269
11333
ENSAPLT00000020314
149136285 - 149161042
24758