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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149140694_149141454_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149140694 - 149141454
Intron Length:
761

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGTGTATA
5'SS Class:
major
3'SS Sequence:
TTATTTCATATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTGCTCTTATTT
Flanking Amino Acid:
GDSSPAVDAVVECNSKLDPT
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
0.9
77.6
31.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
78
0.63
0.9
74.1
35.6
Minor 5ss
40.1
-1.1
2.7
47.2
43.7
Minor BPS
61.4
0.44
1.6
76.67
40.5

Associated Gene:

Gene:
NDRG1
Ensembl Gene ID:
ENSAPLG00000015644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030653
149136937 - 149148269
11333
ENSAPLT00000020314
149136285 - 149161042
24758
ENSAPLT00000016349
149136937 - 149209284
72348