About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149142580_149142956_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
149142580 - 149142956
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATACA
5'SS Class:
strong_major
3'SS Sequence:
CATTTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAAAA
U12 Branch Point Sequence:
TGTATCAAAAAT
Flanking Amino Acid:
NLHLFVNSYTSRRDLEIERP
Intron Amino Acid Position:
227

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
83.1
28.6
Major BPS
59.3
0.23
1
65.3
28.1
Major PPT
83.1
0.74
0.7
81.5
30.1
Minor 5ss
35.4
-1.7
2.7
43.5
43.6
Minor BPS
45.9
-0.2
2
67.62
42.5

Associated Gene:

Gene:
NDRG1
Ensembl Gene ID:
ENSAPLG00000015644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030653
149136937 - 149148269
11333
ENSAPLT00000020314
149136285 - 149161042
24758
ENSAPLT00000016349
149136937 - 149209284
72348