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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149143061_149144596_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149143061 - 149144596
Intron Length:
1536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAACATT
5'SS Class:
strong_major
3'SS Sequence:
GTCTCCCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
CTATTCTGAATG
Flanking Amino Acid:
EGWMDWAATKEEIHSNPDLI
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
84.2
33.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
72.7
0.51
0.8
66.5
29.9
Minor 5ss
44.7
-0.6
3.1
66
45.2
Minor BPS
58.7
0.13
1.5
60.49
41.7

Associated Gene:

Gene:
NDRG1
Ensembl Gene ID:
ENSAPLG00000015644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030653
149136937 - 149148269
11333
ENSAPLT00000020314
149136285 - 149161042
24758
ENSAPLT00000016349
149136937 - 149209284
72348