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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149145202_149146896_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
149145202 - 149146896
Intron Length:
1695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GACTGCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GTCTCTTCCATT
Flanking Amino Acid:
EMIPGILKQFGLKTVIGMGT
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
64.8
0.33
1.1
57.6
42.9
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
48.8
-0
2
68.3
43.3

Associated Gene:

Gene:
NDRG1
Ensembl Gene ID:
ENSAPLG00000015644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020314
149136285 - 149161042
24758
ENSAPLT00000016349
149136937 - 149209284
72348
ENSAPLT00000030653
149136937 - 149148269
11333