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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149161043_149209261_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
149161043 - 149209261
Intron Length:
48219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGGTC
5'SS Class:
major
3'SS Sequence:
TTCATCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATCT
Flanking Amino Acid:
MLAVSSNRYQLLTMSTE
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.2
72.8
38.7
Major BPS
100
1.24
0.5
100
0
Major PPT
81.1
0.7
0.8
75.7
32.7
Minor 5ss
39.3
-1.2
3.7
58.3
46.6
Minor BPS
61.1
0.43
1.8
83.46
37.9

Associated Gene:

Gene:
NDRG1
Ensembl Gene ID:
ENSAPLG00000015644
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016349
149136937 - 149209284
72348