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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149211564_149224692_R

Intron Information:

Intron Rank:
137889
Intron Class:
major
Intron Phase:
Intron Coordinates:
149211564 - 149224692
Intron Length:
13129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TACTTCTGACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
81.3
0.7
0.8
77.7
35.7
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
51.7
0.13
1.7
69.18
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021682
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018514
149211159 - 149225840
14682