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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149254107_149256614_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149254107 - 149256614
Intron Length:
2508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CAATTTTGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GTTTTACTAATG
Flanking Amino Acid:
PRKIKVKKEKILVYNPSFMK
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
64.5
0.33
1
57.9
42.6
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
49.3
-0.1
2
61.82
40

Associated Gene:

Gene:
ST3GAL1
Ensembl Gene ID:
ENSAPLG00000018128
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040568
149251134 - 149274970
23837