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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149256661_149262285_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
149256661 - 149262285
Intron Length:
5625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTGAGTAAG
5'SS Class:
major
3'SS Sequence:
TTTCTTTTAACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
VTALTTGTINFTYVPVPRKI
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1
68.7
37.4
Major BPS
77.5
0.68
1
79.6
33
Major PPT
87.2
0.84
0.8
84.6
28.7
Minor 5ss
32.2
-2
2.8
39.3
40.3
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
ST3GAL1
Ensembl Gene ID:
ENSAPLG00000018128
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040568
149251134 - 149274970
23837