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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149262466_149265548_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
149262466 - 149265548
Intron Length:
3083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGGCTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTTCTTATTT
Flanking Amino Acid:
QEIDSHDFVLRMNRAPTVGY
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.8
76.2
39.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.6
0.64
0.9
73.9
36.8
Minor 5ss
32.1
-2
3.1
40.6
45.6
Minor BPS
69.9
0.7
1.5
84.13
37

Associated Gene:

Gene:
ST3GAL1
Ensembl Gene ID:
ENSAPLG00000018128
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040568
149251134 - 149274970
23837