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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14936894_14942181_F

Intron Information:

Intron Rank:
135792
Intron Class:
major
Intron Phase:
Intron Coordinates:
14936894 - 14942181
Intron Length:
5288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
AATTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATCAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
100
1.24
0.5
100
0
Major PPT
85.8
0.8
0.8
77.7
40.7
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
61.2
0.35
1.9
78.83
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023117
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038131
14936778 - 14943038
6261