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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14936894_14942851_F

Intron Information:

Intron Rank:
135791
Intron Class:
major
Intron Phase:
Intron Coordinates:
14936894 - 14942851
Intron Length:
5958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TGCTACTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
82.4
0.73
0.7
80.8
24.4
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
54.2
0.21
1.8
72.48
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023117
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027779
14936778 - 14943038
6261