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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14942350_14942851_F

Intron Information:

Intron Rank:
135793
Intron Class:
major
Intron Phase:
Intron Coordinates:
14942350 - 14942851
Intron Length:
502

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTATGTATA
5'SS Class:
major
3'SS Sequence:
CCTTCTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TGCTACTGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
81.8
31
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
82.4
0.73
0.7
80.8
24.4
Minor 5ss
47.8
-0.2
2.5
64
40.7
Minor BPS
54.2
0.21
1.8
72.48
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023117
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038131
14936778 - 14943038
6261