About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149452523_149460401_F

Intron Information:

Intron Rank:
147843
Intron Class:
major
Intron Phase:
Intron Coordinates:
149452523 - 149460401
Intron Length:
7879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTTGCACTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTTTTTTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.7
40.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
76.8
0.6
0.8
70.9
34.9
Minor 5ss
36.4
-1.5
2.7
38.9
40.3
Minor BPS
58.2
0.34
1.7
76.11
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029575
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032151
149452163 - 149462377
10215