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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149460493_149461923_F

Intron Information:

Intron Rank:
147844
Intron Class:
major
Intron Phase:
Intron Coordinates:
149460493 - 149461923
Intron Length:
1431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TATACATCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTCTTATACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.8
38.7
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
69.1
0.43
0.9
59.2
41.5
Minor 5ss
35.7
-1.6
3
48.8
47
Minor BPS
55.8
0.18
2
71.79
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029575
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032151
149452163 - 149462377
10215