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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149460698_149461923_F

Intron Information:

Intron Rank:
147842
Intron Class:
major
Intron Phase:
Intron Coordinates:
149460698 - 149461923
Intron Length:
1226

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCTG
5'SS Class:
major
3'SS Sequence:
TATACATCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTCTTATACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.3
0.46
1.1
57.8
46.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
69.1
0.43
0.9
59.2
41.5
Minor 5ss
32.6
-2
3.7
46.8
48.5
Minor BPS
55.8
0.18
2
71.79
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029575
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028532
149460087 - 149462949
2863