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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14949860_14958073_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14949860 - 14958073
Intron Length:
8214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
TCTCTTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTATAAGT
Flanking Amino Acid:
FQGDDTVVIASKPYIFDRVF
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
58.8
40.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.5
0.87
0.6
83.5
24.9
Minor 5ss
24.6
-2.9
3.4
32.5
42.6
Minor BPS
60.8
0.42
1.9
83.99
37.1

Associated Gene:

Gene:
KIF5B
Ensembl Gene ID:
ENSAPLG00000008099
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033827
14949734 - 14982042
32309
ENSAPLT00000024704
14949734 - 14982042
32309
ENSAPLT00000008521
14949734 - 14982042
32309