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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149515981_149521769_R

Intron Information:

Intron Rank:
129076
Intron Class:
major
Intron Phase:
Intron Coordinates:
149515981 - 149521769
Intron Length:
5789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGAT
5'SS Class:
strong_major
3'SS Sequence:
TCTATTACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTCCCATAGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.2
26.4
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
80
0.68
0.9
74.2
35
Minor 5ss
32.1
-2
3.5
46.6
48.7
Minor BPS
49.9
0.07
2
74
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016609
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036692
149515977 - 149541393
25417