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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149515981_149535623_R

Intron Information:

Intron Rank:
129071
Intron Class:
major
Intron Phase:
Intron Coordinates:
149515981 - 149535623
Intron Length:
19643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAACT
5'SS Class:
major
3'SS Sequence:
TCTATTACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTCCCATAGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
74.2
36.1
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
80
0.68
0.9
74.2
35
Minor 5ss
30.2
-2.3
2.9
33.8
41.1
Minor BPS
49.9
0.07
2
74
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016609
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017200
149515955 - 149541393
25439