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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149521876_149535623_R

Intron Information:

Intron Rank:
129077
Intron Class:
major
Intron Phase:
Intron Coordinates:
149521876 - 149535623
Intron Length:
13748

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAACT
5'SS Class:
major
3'SS Sequence:
TATTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCTCATTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
74.2
36.1
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
85
0.79
0.7
80.5
31.3
Minor 5ss
30.2
-2.3
2.9
33.8
41.1
Minor BPS
54.2
0.21
1.8
73.99
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016609
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036692
149515977 - 149541393
25417