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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149535738_149540951_R

Intron Information:

Intron Rank:
129072
Intron Class:
major
Intron Phase:
Intron Coordinates:
149535738 - 149540951
Intron Length:
5214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
TTTCCATCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCATCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
69.9
34.9
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
74.7
0.56
0.9
67.7
37.9
Minor 5ss
35.2
-1.7
3.3
49.1
41.3
Minor BPS
66.4
0.5
2
83.65
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016609
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036692
149515977 - 149541393
25417
ENSAPLT00000019974
149522424 - 149541393
18970
ENSAPLT00000017200
149515955 - 149541393
25439