Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149546742_149550592_R

Intron Information:

Intron Rank:

133861

Intron Class:

major

Intron Phase:

Intron Coordinates:

149546742 - 149550592

Intron Length:

3851

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCTGTATA

5'SS Class:

major

3'SS Sequence:

TTTTTTTTCCCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTAGAC

U12 Branch Point Sequence:

TGCATTTAGACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.3

79.7

35.3

Major BPS

69.3

0.48

1.1

66.7

Major PPT

93.7

0.98

0.6

88.2

29.1

Minor 5ss

40.8

-1

2.6

51.4

45.1

Minor BPS

47.7

-0.1

1.7

63.35

41.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019274

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024197

149546048 - 149568378

22331