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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149550745_149568129_R

Intron Information:

Intron Rank:
133862
Intron Class:
major
Intron Phase:
Intron Coordinates:
149550745 - 149568129
Intron Length:
17385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CCTTTTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.7
35.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.9
0.9
0.7
85.1
29.6
Minor 5ss
35.2
-1.7
2.7
39.3
40.3
Minor BPS
54.1
0.11
1.6
60.49
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019274
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024197
149546048 - 149568378
22331