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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14958162_14959351_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14958162 - 14959351
Intron Length:
1190

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTGG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTAACCCTAATG
Flanking Amino Acid:
YNDCAKKIVKDVLEGYNGTI
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
70.4
42.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
84.8
0.78
0.7
77.7
31.1
Minor 5ss
36.1
-1.6
3.3
46.8
48.5
Minor BPS
58.8
0.14
1.8
66.17
41.3

Associated Gene:

Gene:
KIF5B
Ensembl Gene ID:
ENSAPLG00000008099
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024704
14949734 - 14982042
32309
ENSAPLT00000008521
14949734 - 14982042
32309
ENSAPLT00000033827
14949734 - 14982042
32309