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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149594311_149603073_R

Intron Information:

Intron Rank:
135678
Intron Class:
major
Intron Phase:
Intron Coordinates:
149594311 - 149603073
Intron Length:
8763

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATGACT
5'SS Class:
major
3'SS Sequence:
TATTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
74.1
35.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88
0.85
0.8
85.7
33.4
Minor 5ss
29.5
-2.3
3.1
41
45
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020402
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046852
149594252 - 149611549
17298
ENSAPLT00000036062
149594024 - 149618490
24467