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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149603206_149611529_R

Intron Information:

Intron Rank:
135681
Intron Class:
major
Intron Phase:
Intron Coordinates:
149603206 - 149611529
Intron Length:
8324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGTA
5'SS Class:
strong_major
3'SS Sequence:
ACTTTAATTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTACTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
77.8
0.63
0.9
71.1
38
Minor 5ss
36.9
-1.5
3.2
48.5
47.7
Minor BPS
81.9
1.08
1
92.54
29.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020402
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046852
149594252 - 149611549
17298