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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14964556_14966497_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14964556 - 14966497
Intron Length:
1942

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTACGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAC
U12 Branch Point Sequence:
GTCTTCCTACGT
Flanking Amino Acid:
ETKSTLLFGQRAKTIKNTVC
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
60.7
0.27
1.1
67.6
34.6
Major PPT
73.4
0.53
0.8
69.9
29.7
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
44.9
-0.3
2.2
64.41
46

Associated Gene:

Gene:
KIF5B
Ensembl Gene ID:
ENSAPLG00000008099
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033827
14949734 - 14982042
32309
ENSAPLT00000024704
14949734 - 14982042
32309
ENSAPLT00000008521
14949734 - 14982042
32309