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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14966647_14967667_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14966647 - 14967667
Intron Length:
1021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTATTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TATTCCTTTATT
Flanking Amino Acid:
LENELNRWRNGETVPVDEQF
Intron Amino Acid Position:
371

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.5
37.2
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
74.8
0.56
1
79.4
31.5
Minor 5ss
33
-1.9
2.9
37.4
41.9
Minor BPS
76.3
0.91
1.5
89.12
35.3

Associated Gene:

Gene:
KIF5B
Ensembl Gene ID:
ENSAPLG00000008099
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033827
14949734 - 14982042
32309
ENSAPLT00000024704
14949734 - 14982042
32309
ENSAPLT00000008521
14949734 - 14982042
32309