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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14968723_14971129_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14968723 - 14971129
Intron Length:
2407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
GTTTACTAAAAT
Flanking Amino Acid:
LKTQMLDQEEVTLASIDAEL
Intron Amino Acid Position:
459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
73.1
0.52
0.8
67.4
33.1
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
57.5
0.31
2
79.4
42

Associated Gene:

Gene:
KIF5B
Ensembl Gene ID:
ENSAPLG00000008099
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024704
14949734 - 14982042
32309