About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14969994_14971129_F


Intron Information:

Intron Rank:
14

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
14969994 - 14971129

Intron Length:
1136

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
TCG|GTAGGAGAA

5'SS Class:
major

3'SS Sequence:
ACTTCTACTGTAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TACTAAA

U12 Branch Point Sequence:
GTTTACTAAAAT

Flanking Amino Acid:
LLSDELNQKSVTLASIDAEL

Intron Amino Acid Position:
528

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
72.2
0.52
1.1
62.6
38.1

Major BPS
77.5
0.68
0.8
76.2
24.6

Major PPT
73.1
0.52
0.8
67.4
33.1

Minor 5ss
28.8
-2.4
3.5
37.9
47

Minor BPS
57.5
0.31
2
79.4
42

Associated Gene:

Gene:
KIF5B

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

14949734 - 14982042
32309

14949734 - 14982042
32309