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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149712485_149712745_F

Intron Information:

Intron Rank:
131877
Intron Class:
major
Intron Phase:
Intron Coordinates:
149712485 - 149712745
Intron Length:
261

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTTGTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
81.9
0.72
0.9
78.6
39.1
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
47.8
-0
2.1
71.47
40.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020785
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026493
149711851 - 149713009
1159