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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149712485_149717409_F

Intron Information:

Intron Rank:
131878
Intron Class:
major
Intron Phase:
Intron Coordinates:
149712485 - 149717409
Intron Length:
4925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATACGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCTTTCTTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
75.2
40.6
Major BPS
100
1.24
0.5
100
0
Major PPT
74.4
0.55
0.9
71
33.8
Minor 5ss
36.8
-1.5
3.5
53.4
44.8
Minor BPS
84.8
1.07
1
85.68
32.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020785
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044555
149711851 - 149718302
6452