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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_14974235_14976128_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14974235 - 14976128
Intron Length:
1894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TATTCTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATGTAT
U12 Branch Point Sequence:
TTTTGCTCAGAT
Flanking Amino Acid:
QEKSRKLHELTVMQDRREQA
Intron Amino Acid Position:
769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.2
81.4
32.7
Major BPS
54.9
0.12
1.4
55.4
41.7
Major PPT
83.6
0.76
0.7
82
29.5
Minor 5ss
35.7
-1.6
3.3
48.3
41.3
Minor BPS
48.9
-0
2.3
77.81
44.1

Associated Gene:

Gene:
KIF5B
Ensembl Gene ID:
ENSAPLG00000008099
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024704
14949734 - 14982042
32309
ENSAPLT00000008521
14949734 - 14982042
32309
ENSAPLT00000033827
14949734 - 14982042
32309