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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149764776_149766484_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149764776 - 149766484
Intron Length:
1709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGCAC
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTCAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TTATCCATATAT
Flanking Amino Acid:
VEHDGETKWELTAEVSEEAS
Intron Amino Acid Position:
1081

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
66.4
39.3
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
80.3
0.68
1
79.2
38.4
Minor 5ss
30.4
-2.2
3.4
41
45.6
Minor BPS
55.6
0.25
2
79.66
41.6

Associated Gene:

Gene:
ZFAT
Ensembl Gene ID:
ENSAPLG00000014922
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046116
149749938 - 149842143
92206
ENSAPLT00000037119
149761806 - 149842143
80338
ENSAPLT00000015577
149750192 - 149845107
94916