About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149772435_149776990_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
149772435 - 149776990
Intron Length:
4556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCAAA
5'SS Class:
major
3'SS Sequence:
TTTTTGCTCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGCTTTCTAATG
Flanking Amino Acid:
RHMEQHVSFKPFRCAHCHYS
Intron Amino Acid Position:
995

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.2
74.1
38.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80.5
0.69
0.8
73.8
36.9
Minor 5ss
44.2
-0.6
2.7
57.2
47.1
Minor BPS
49.8
-0.1
1.7
55.73
40.4

Associated Gene:

Gene:
ZFAT
Ensembl Gene ID:
ENSAPLG00000014922
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046116
149749938 - 149842143
92206
ENSAPLT00000037119
149761806 - 149842143
80338
ENSAPLT00000015577
149750192 - 149845107
94916