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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149781636_149784194_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149781636 - 149784194
Intron Length:
2559

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGTTTCATAGCG
Flanking Amino Acid:
DLQRHIWAHEGVKPFKCSLC
Intron Amino Acid Position:
907

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
72.3
37.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
90
0.9
0.6
89.8
18.6
Minor 5ss
35.9
-1.6
3.3
50.8
45.8
Minor BPS
52.7
-0
1.9
65
42.5

Associated Gene:

Gene:
ZFAT
Ensembl Gene ID:
ENSAPLG00000014922
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015577
149750192 - 149845107
94916
ENSAPLT00000046116
149749938 - 149842143
92206
ENSAPLT00000037119
149761806 - 149842143
80338