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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149802034_149803209_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
149802034 - 149803209
Intron Length:
1176

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTGATTTTATTT
Flanking Amino Acid:
VYGDLECEYCGKLFWYQVHY
Intron Amino Acid Position:
750

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
69.6
41.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.3
0.86
0.8
85.9
32.8
Minor 5ss
32.8
-2
3.1
39.9
40.3
Minor BPS
49.2
0.02
1.6
63.14
42.3

Associated Gene:

Gene:
ZFAT
Ensembl Gene ID:
ENSAPLG00000014922
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015577
149750192 - 149845107
94916
ENSAPLT00000046116
149749938 - 149842143
92206
ENSAPLT00000037119
149761806 - 149842143
80338