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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_149804682_149804957_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
149804682 - 149804957
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
AATACTGTAAAT
Flanking Amino Acid:
TPYEQAMKSSRLGPTQLKIF
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
80.7
34.7
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
86.6
0.82
0.6
85.4
22
Minor 5ss
43.9
-0.7
2.8
58.4
46.2
Minor BPS
48.8
-0
2.1
69.72
40.8

Associated Gene:

Gene:
ZFAT
Ensembl Gene ID:
ENSAPLG00000014922
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046116
149749938 - 149842143
92206
ENSAPLT00000037119
149761806 - 149842143
80338
ENSAPLT00000015577
149750192 - 149845107
94916