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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_150038953_150040850_F

Intron Information:

Intron Rank:
148002
Intron Class:
major
Intron Phase:
Intron Coordinates:
150038953 - 150040850
Intron Length:
1898

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTTAT
U12 Branch Point Sequence:
TGTGTCTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
74.8
0.62
0.9
63.7
35.1
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
77.7
0.95
1.3
88.23
36.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029687
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044179
150034653 - 150044068
9416
ENSAPLT00000037511
150034653 - 150053496
18844