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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_150040954_150053141_F

Intron Information:

Intron Rank:
148003
Intron Class:
major
Intron Phase:
Intron Coordinates:
150040954 - 150053141
Intron Length:
12188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTCCAC
5'SS Class:
major
3'SS Sequence:
TCCTGTTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTTTTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
57.8
41.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
79.8
0.67
0.8
72.5
37.7
Minor 5ss
44.3
-0.6
2.8
59.2
45.5
Minor BPS
74.2
0.84
1.5
90.89
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029687
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037511
150034653 - 150053496
18844