About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15016582_15042678_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15016582 - 15042678
Intron Length:
26097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TGCTCTTTAATA
Flanking Amino Acid:
LSSSSTEQVQPTTPPSQGRP
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
84.1
30.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73.5
0.53
0.8
70.1
29.3
Minor 5ss
47.4
-0.3
2.8
64.4
47
Minor BPS
75.3
0.79
1.1
75.58
36.3

Associated Gene:

Gene:
ARHGAP12
Ensembl Gene ID:
ENSAPLG00000007667
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019650
15015827 - 15085570
69744
ENSAPLT00000042048
15015827 - 15086570
70744
ENSAPLT00000018259
15015827 - 15086570
70744
ENSAPLT00000038659
15015827 - 15085570
69744
ENSAPLT00000007993
15010829 - 15085570
74742
ENSAPLT00000036342
15010829 - 15085570
74742
ENSAPLT00000033992
15015827 - 15086570
70744