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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15016582_15050720_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15016582 - 15050720
Intron Length:
34139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTCCTGTCATC
Flanking Amino Acid:
LSSSSTEQVQWLKHADEQGR
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
84.1
30.2
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
92.4
0.95
0.6
88.6
20.8
Minor 5ss
47.4
-0.3
2.8
64.4
47
Minor BPS
47.1
-0.2
2.3
67.01
39.4

Associated Gene:

Gene:
ARHGAP12
Ensembl Gene ID:
ENSAPLG00000007667
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023174
15015827 - 15085570
69744